texTRACTOR - NLP annotation for clinical notes
texTRACTOR is a pain labeling web application for clinical notes developed in Python FLASK.
texTRACTOR allows doctors to review patients’ consultation notes and manually annotate their pain score. texTRACTOR includes tools to extract text data from microsoft .doc or .docx files. texTRACTOR allows multiple users to work on the same or separate dataset.
Publications describing this code include:
- Hossein Naseri, Kamran Kafi, Sonia Skamene, Marwan Tolba, Mame Daro Faye, Paul Ramia, Julia Khriguian, John Kildea (2021). Development of a generalizable natural language processing pipeline to extract physician-reported pain from clinical reports - Generated using publicly-available datasets and tested on institutional clinical reports for cancer patients with bone metastases. In Journal of Biomedical Informatics.