In the Kildea Lab at the Research Institute of the McGill University Health Centre (RI-MUHC) we are studying how ionizing radiation causes and cures cancer, and we are building person-centered software to power the learning healthcare system of tomorrow.
In our all lab’s activities, we aspire to uphold the principles of equity, diversity, inclusion and openness.
Our research projects fall into three broad categories: (1) Neutron-Induced Carcinogenic Effects (NICE) projects, (2) Radiation Oncology Knowledge Sharing (ROKS) projects, and (3) Opal projects.
Opal is the award-winning patient portal that is developed and operated by the Opal Health Informatics Group (O-HIG) at the RI-MUHC. John Kildea is a co-founder of the O-HIG and he directs its research and innovation activities. Opal is powering the Quebec SmartCare Consortium in which John is the principal investigator.

What’s happening in the Kildea lab
Representing the NICE, ROKS and Opal projects of the lab. All publications are listed under the Publications menu.

Background: Head and neck cancer (HNC) patients undergoing radiotherapy (RT) may experience anatomical changes during treatment, which can compromise the validity of the initial treatment plan, necessitating replanning. However, ad hoc replanning disrupts clinical workflows and increases workload.Currently, no standardized method exists to quantify anatomical variation that necessitates replanning..
Purpose: This project aimed to create geometrical metrics to describe anatomical changes in HNC patients during RT. The usefulness of these metrics was evaluated by a univariate analysis and through machine learning (ML) models to predict the need for replanning.
Methods: A cohort of 150 HNC patients treated at McGill University Health Centre was analyzed. Based on the shapes of the RT structures (body, PTV, mandible, neck, and submandibular contours), we developed 43 metrics and automatically calculated them through a Python pipeline that we called HNGeoNatomyX. Univariate analysis using linear regression was conducted to obtain the rate of change of each metric. We also obtained the relative variation of each metric between the pre-treatment and replanning-requested scans. Fraction-specific ML models (incorporating information available up to and including the specific fraction) for fractions 5, 10, and 15 were built using metrics, clinical data, and feature selection techniques. Model performance was estimated with repeated stratified 5-fold cross-validation resampling technique and the area under the curve (AUC) of the receiver operating characteristic (ROC) curve.
Results: Univariate analysis showed that body- and neck-related metrics were most predictive of replanning need. Our best specific multivariate models for fractions 5, 10, and 15 yielded testing scores of 0.82, 0.70, and 0.79, respectively. Our models early predicted replanning for 76% of the true positives
Conclusions: The created metrics have the potential to characterize and distinguish which patients will necessitate RT replanning. They show promise in guiding clinicians to evaluate RT replanning for HNC patients and streamline workflows.

This paper presents RadiSeq a single- and bulk-cell whole-genome DNA sequencing simulator that enables the research community to perform complex simulations of radiation-exposed DNA sequencing, supporting the optimization, planning, and validation of costly and time-intensive radiation biology experiments.

This paper describes the pioneering process of participatory stakeholder co-design that our research team used to build and deploy the Opal patient portal at the Cedars Cancer Centre of the McGill University Health Centre.

This paper, which was listed in Editor’s Picks 2015, was our pioneering report in the field of neutron spectrometry that demonstrated how Detec’s Nested Neutron Spectrometer (NNS) could be used for practical neutron spectral measurements in radiotherapy environments. Using the NNS in passive mode, we were able to determine a radiotherapy neutron spectrum in just over an hour, whereas previously such measurements took days or weeks using passive techniques. Our NICE research program builds upon this initial work.